Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0738041 with 18 members (CD40 ligand)

Sarcopterygii / Tetrapoda / Amniota / Sauria / Archelosauria / Archosauria /

Completeness score: 0.95

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This HOG has 21 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0738041.2b	1080	62	CD40 ligand
2	HOG:E0738041	539	114	CD40 ligand
3	HOG:E0702656.2b	30	2	Tumor necrosis factor ligand superfamily member 6-like
4	HOG:E0702656	25	48	Tumor necrosis factor ligand superfamily member 6-like
5	HOG:E0702656.3b	24	2	Tumor necrosis factor ligand superfamily member 6-like
6	HOG:E0738041.2b.1b	18	1	CD40 ligand
7	HOG:E0738041.2b.1a	18	1	CD40 ligand
8	HOG:E0738041.1b	18	1	CD40 ligand
9	HOG:E0738041.1a	18	1	CD40 ligand
10	HOG:E0702656.1a	18	1	Tumor necrosis factor ligand superfamily member 6-like
11	HOG:E0738041.2a	17	2	CD40 ligand
12	HOG:E0702656.1b	17	1	Tumor necrosis factor ligand superfamily member 6-like
13	HOG:E0681507	17	2	-
14	HOG:E0702656.3a	13	1	Tumor necrosis factor ligand superfamily member 6-like
15	HOG:E0702656.2a	9	2	Tumor necrosis factor ligand superfamily member 6-like
16	HOG:E0675141	7	2	-
17	HOG:E0702594.3b	4	46	tumor necrosis factor ligand superfamily member
18	HOG:E0537497	4	15	Derived by automated computational analysis using gene prediction method Gnomon
19	HOG:E0745531	3	13	tumor necrosis factor ligand superfamily member 10 like
20	HOG:E0675472	3	2	-
21	HOG:E0702052	1	47	tumor necrosis factor ligand superfamily member

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